ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGACAGAAGAGAGAGAGCAC miRNA* GAGCTCTTTCTTCTTCTTTCATTG mismatches: 2 bulges: 1 |
pre-miRNA
TCAGCTTTGGATGACAGAAGAGAGAGAGCACATCCTGTCGGCGACGCTATGTATGGAAATCTCCCAGCCATCAATTTTTCTTGAGAGGAATTCCTTGAAA
CAGGATCCTGAGAGCTCTTTCTTCTTCTTTCATTGTGCCCTG
dot-bracket secondary structure
...((....(((((.((((((((((((((.((((((((.(((.((.....))..(((....)))..))).((((...((((.....))))....)))).)
)))))...))...)))))))).)))))).)))))..))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCAGCTTTGGATGACAGAAGAGAGAGAGCACATCCTGTCGGCGACGCTATGTATGGAAATCTCCCAGCCATCAATTTTTCTTGAGAGGAATTCCTTGAAA
CAGGATCCTGAGAGCTCTTTCTTCTTCTTTCATTGTGCCCTG
dot-bracket secondary structure
...((....(((((.((((((((((((((.((((((((.(((.((.....))..(((....)))..))).((((...((((.....))))....)))).)
)))))...))...)))))))).)))))).)))))..))....
SIMILARITIES| miRBase mtr-MIR156: 0.0000000001 PMRD cpt-miR156b: 2e-18 microPC miR157: 0.0001 | UniProt no hits RFAM mir-156: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
