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ABOUT THIS RECORD

ID: MNEST008860
species: Populus trichocarpa
miRNA family: MIRf1101
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGGAGAAGCTGACAGATGA

miRNA*
 GCTTGTTAGCATCTTCTCATT

mismatches: 5
bulges: 0
View larger
pre-miRNA
 GCGCCATGTCATGACAAATCTTGGGGAGAAGCTGACAGATGAGGAGGTTGATGAGATGATCCGTGAGGCTGATGTGGATGGTGATGGTCAGATCAACTAC
GAAGAATTTGTCAAAGTTATGATGGCCAAGTGAGGTTTACTCACCCAAAACCCAAAAACCAAATGCATAAAAACAAAAAAGAGAGACAGGGCAAATAAGT
TTGATGAGAATTCTATTTCCCAATTAGGACATCTTCATTTGATGTTATTAGCTTCAGCTGGGTTGTTTGTTCTGTTGTTTGCATTATTTTGTGGCACTTT
TCATTAATATCTACTTGTTTGCTCTGTTTTTTGTCCAGTAGCTTGGCTTGTTAGCATCTTCTCATTGATGTTTGGCATTTTTCC

dot-bracket secondary structure
..((((......((((..((.((((((((.((((((((....(((.(((.....)))..)))((.((((((...((((((((..((((((....((((((
(((...)))))...))))....))))))..((.(((((.........)))))))...))))..((........)).....((((((((((((((((((((
((((((((((..((((....(((.(((((((..((((.((((.((.....)).)))).)))).....)))))))....))).........))))...)))
))))))).....)))))))))))))))))))).)))).)))))).)))))))))).))))))))..))))))))))........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|P04464|CALM_WHEAT: 7e-18

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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