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ABOUT THIS RECORD

ID: MNEST008866
species: Populus trichocarpa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCATCTTA

miRNA*
AGGTGCAGGTGCAAGTGCAGG

mismatches: 0
bulges: 0

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pre-miRNA
TTATGCATGCCAATATGTTGCCTTTATCTGCATTTGCACCTGCATCTTATTGCGTGGGTTTTGTTTTTGACTCCACAAACAAAATCAAGTTCTGTCGATA
CAGTATGTGGGACAATTAGATATGGAAACTAATAAGCTTAGTTGAGGTGCAGGTGCAAGTGCAGGTGAATGCCATTTTGGTAATGTTTTC


dot-bracket secondary structure
....(((((((((.(((..((.(((((((((((((((((((((((((((..((.(((.((((((.(((((.((((((.((...(((..........))).
..)).))))))....))))).)))))).)))....)).....))))))))))))))))))))))))))).))))).))))).))))....



SIMILARITIES
miRBase ptc-MIR530b: 1e-85

PMRD ptc-miR530b: 1e-85

microPC miR530: 2e-53
UniProt no hits

RFAM MIR530: 2e-84
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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