ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: miR399e
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGCTTCTCTTTGTTGGCAGG miRNA* TGCCAAAGGAGAGTTGCCCTG mismatches: 3 bulges: 0 |
pre-miRNA
TCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCT
TTAGCTTAAT
dot-bracket secondary structure
....((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))))).)))).)
)).)))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCCTGTTGCTGCT
TTAGCTTAAT
dot-bracket secondary structure
....((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))))).)))).)
)).)))))..
SIMILARITIES| miRBase pvu-MIR399a: 2e-55 PMRD pvu-miR399a: 2e-55 microPC miR399: 3e-26 | UniProt no hits RFAM mir-399: 0.0000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
