ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGTTGCCCTG miRNA* GGGCTTCTCTTTGTTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
GATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCC
TGTTGCTGCTTTAGCTTAATATGTAATCTT
dot-bracket secondary structure
(((......)))..((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))
))).)))).))).)))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATATTATAGTCAATAAGCAAACCAGTTATAGGGCTTCTCTTTGTTGGCAGGAAACGACATGACCACTTCATGAAATATCTTGCCAAAGGAGAGTTGCCC
TGTTGCTGCTTTAGCTTAATATGTAATCTT
dot-bracket secondary structure
(((......)))..((((((((.((((.(((((((..((((((.(((((((((.....(((((.....))))).....))))))))).))))))..))))
))).)))).))).)))))............
SIMILARITIES| miRBase pvu-MIR399a: 2e-67 PMRD pvu-miR399a: 2e-67 microPC miR399: 3e-26 | UniProt no hits RFAM mir-399: 0.0000000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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