ABOUT THIS RECORDspecies: Phaseolus vulgaris
miRNA family: MIR170
source: miRNEST
Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATTGAGCCGCGTCAATATC miRNA* TATTGGCGCGCCTCAATTTGA mismatches: 2 bulges: 0 |
pre-miRNA
TTTGGTGATGGAGAAGTGTTATATGAATTGCACAAGCCAAGGTATTGGCGCGCCTCAATTTGAAGACATGGTTAACAGGAAAACCAACCATGTAGTTTTA
ATTGAGCCGCGTCAATATCTCATCTTGCACTTCTTTCCATCTCCAACCCCTCAAACTC
dot-bracket secondary structure
.((((.(((((((((((((...((((...((....))...((((((((((((.(((((((.((..((((((((............))))))))..))..)
)))))).))))))))))))))))...)))))))..)))))).))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TTTGGTGATGGAGAAGTGTTATATGAATTGCACAAGCCAAGGTATTGGCGCGCCTCAATTTGAAGACATGGTTAACAGGAAAACCAACCATGTAGTTTTA
ATTGAGCCGCGTCAATATCTCATCTTGCACTTCTTTCCATCTCCAACCCCTCAAACTC
dot-bracket secondary structure
.((((.(((((((((((((...((((...((....))...((((((((((((.(((((((.((..((((((((............))))))))..))..)
)))))).))))))))))))))))...)))))))..)))))).))))............
SIMILARITIES| miRBase ctr-MIR171: 0.0000000005 PMRD gma-miR170n: 7e-28 microPC miR171: 3e-27 | UniProt no hits RFAM MIR171_1: 0.0000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
