miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST008916
species: Phaseolus vulgaris
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Phaseolus vulgaris Phaseolus Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGCTCGAGG

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGAGGTTGAGAGGAATGTTGTCTGGCTCGAGGTCATGGAGGAGGAGAGTTCTCAGATAAACTCTTTCACCCAAAGTTTCCAATGGAAATTTACCCTCTAA
CACCAAAATGATTCTCGGACCAGGCTTCATTCCCCCCACCCAA

dot-bracket secondary structure
...((.((...((((((..((((((.(((((((((((((((.((((((((........))))))))......((((((((...))))))))..)))))..
.......)))).)))))).))))))..))))))...)).))..


SIMILARITIES
miRBase pvu-MIR166a: 2e-77

PMRD pvu-miR166: 7e-77

microPC miR166: 6e-65		UniProt no hits

RFAM mir-166: 0.00000000000004		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST046743)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;