ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCATGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
TTTTGTATATGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGCATATTCCTA
dot-bracket secondary structure
......((((((.(((((((.((((((((((((((.(((.(((.(((....))).))).))).)))))))))))))).))))))).)))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTGTATATGCCTGGCTCCCTGTATGCCATTTGCAGAGCCCACCGGAGCATCGATGGCCTCCGTGGATGGCGTATGAGGAGCCATGCATATTCCTA
dot-bracket secondary structure
......((((((.(((((((.((((((((((((((.(((.(((.(((....))).))).))).)))))))))))))).))))))).)))))).....
SIMILARITIES| miRBase vvi-MIR160e: 4e-37 PMRD vvi-miR160f: 4e-37 microPC miR160: 4e-40 | UniProt no hits RFAM mir-160: 3e-35 | most similar mature miRNAs |
Identical with: miR160 from microPC (MNEST045059) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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