ABOUT THIS RECORDspecies: Peromyscus maniculatus bairdii
miRNA family: mir-1195
source: miRNEST
Taxonomy by NCBI:
Peromyscus maniculatus bairdii Peromyscus maniculatus Peromyscus Neotominae Cricetidae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGTTCAAGGCCAGCCTGGT miRNA* CAGGATGGCCAGGGCTACATA mismatches: 3 bulges: 2 |
pre-miRNA
ACAGAGGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATGGCCAGGGCTACATAGAGAAACCCTGTCTCGAA
dot-bracket secondary structure
...((((((((....(((((((((((((..(((((.(((((.((........))..))))).))))).))))).))))))))...))))))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACAGAGGCAGGCAGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGATGGCCAGGGCTACATAGAGAAACCCTGTCTCGAA
dot-bracket secondary structure
...((((((((....(((((((((((((..(((((.(((((.((........))..))))).))))).))))).))))))))...))))))))...
SIMILARITIES| miRBase mmu-mir-1195: 5e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-1937: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
