ABOUT THIS RECORDspecies: Crassostrea gigas
miRNA family: miR-4188
source: miRNEST
Taxonomy by NCBI:
Crassostrea gigas Crassostrea Ostreidae Ostreoidea Ostreoida Pteriomorphia Bivalvia Mollusca Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAAATGCAATGTTTATTAGC miRNA* GGATTGATTTTCATGTGAAC mismatches: 4 bulges: 1 |
pre-miRNA
TCATAATTCTACATCATGTGTTCAAATGCAATGTTTATTAGCTCCTAAAGGTGGATTGATTTTCATGTGAACATGTTGTTGACATATTTT
dot-bracket secondary structure
.......((.(((..(((((((((.(((.((.(((.(((.(((......))).))).))).))))).)))))))))))).))........
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TCATAATTCTACATCATGTGTTCAAATGCAATGTTTATTAGCTCCTAAAGGTGGATTGATTTTCATGTGAACATGTTGTTGACATATTTT
dot-bracket secondary structure
.......((.(((..(((((((((.(((.((.(((.(((.(((......))).))).))).))))).)))))))))))).))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
