ABOUT THIS RECORDspecies: Dissostichus mawsoni
miRNA family: let-7
source: miRNEST
Taxonomy by NCBI:
Dissostichus mawsoni Dissostichus Nototheniidae Notothenioidei Perciformes Percomorpha Euacanthopterygii Acanthopterygii Holacanthopterygii Euacanthomorpha Acanthomorpha Ctenosquamata Eurypterygii Neoteleostei Neognathi Euteleostei Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGGTAGTAGGTTGTATAGT miRNA* TATACAACTTACTGTCTTTCC mismatches: 1 bulges: 0 |
pre-miRNA
GTTAAAGACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTCATACCCTTCCTGTCAGATAACTATACAACTTACTGTCTTTCCTGAAGTG
GCTGTAATGTC
dot-bracket secondary structure
.......((.((((((((((..(((((((((((((((((((((..(((((...)))))...........))))))))))))))))))))).))))))).)
)).))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTAAAGACTGTCCTTTGGGGTGAGGTAGTAGGTTGTATAGTTTTAGGGTCATACCCTTCCTGTCAGATAACTATACAACTTACTGTCTTTCCTGAAGTG
GCTGTAATGTC
dot-bracket secondary structure
.......((.((((((((((..(((((((((((((((((((((..(((((...)))))...........))))))))))))))))))))).))))))).)
)).))......
SIMILARITIES| miRBase tni-let-7a-2: 5e-40 PMRD no hits microPC no hits | UniProt no hits RFAM let-7: 1e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
