ABOUT THIS RECORDspecies: Rutilus rutilus
miRNA family: mir-617
source: miRNEST
Taxonomy by NCBI:
Rutilus rutilus Rutilus Cyprinidae Cyprinoidea Cypriniformes Cypriniphysi Otophysi Ostariophysi Otocephala Clupeocephala Elopocephala Teleostei Neopterygii Actinopteri Actinopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGACTTCTCTTTTGAAGGTGA miRNA* AGTGTCAGGAGAAGAGTCTAA mismatches: 4 bulges: 0 |
pre-miRNA
AGGTCCCATTTCAGTGTCAGGAGAAGAGTCTAACGCACACCAGTGCAGAGGAGATCATGAGGAAAATCAAACAAGGAGACTTCTCTTTTGAAGGTGAAGC
CTGGAG
dot-bracket secondary structure
...(((..(((((...((((((((.((((((...((((....)))).((.....)).(((......))).......)))))).))))))))...))))).
..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AGGTCCCATTTCAGTGTCAGGAGAAGAGTCTAACGCACACCAGTGCAGAGGAGATCATGAGGAAAATCAAACAAGGAGACTTCTCTTTTGAAGGTGAAGC
CTGGAG
dot-bracket secondary structure
...(((..(((((...((((((((.((((((...((((....)))).((.....)).(((......))).......)))))).))))))))...))))).
..))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q5F3L1|KS6A5_CHICK: 0.00000002 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
