ABOUT THIS RECORDspecies: Daphnia magna
miRNA family: mir-1322
source: miRNEST
Taxonomy by NCBI:
Daphnia magna Daphnia Daphniidae Anomopoda Cladocera Diplostraca Phyllopoda Branchiopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGCTGCTGCTGCTGCTGCC miRNA* CCGTTGCAGCTGCAGCCGCTT mismatches: 4 bulges: 0 |
pre-miRNA
TCAAGATGGAAGAAGCTGCTGCTGCTGCTGCTGCCGCTGCAGCCGCCGGATCTTCAACTGCTGTCGCCGTGGACGATGATGATGAAGACGAAGAGGACGA
TGAAGAGCATCCGCATCACCATGGTTACGATTACCATCACGCCGATGGAGTTTCCGCAGCGGCCGTTGCAGCTGCAGCCGCTTTCTCCGCTCAC
dot-bracket secondary structure
....((((((.(((((.(((((.(((((.((.((((((((..(((.(((............(((.(((((((..((((..((((................
.......))))..)))).))))))).)))............))).))).......)))))))).)).))))).))))).))))).)))).))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCAAGATGGAAGAAGCTGCTGCTGCTGCTGCTGCCGCTGCAGCCGCCGGATCTTCAACTGCTGTCGCCGTGGACGATGATGATGAAGACGAAGAGGACGA
TGAAGAGCATCCGCATCACCATGGTTACGATTACCATCACGCCGATGGAGTTTCCGCAGCGGCCGTTGCAGCTGCAGCCGCTTTCTCCGCTCAC
dot-bracket secondary structure
....((((((.(((((.(((((.(((((.((.((((((((..(((.(((............(((.(((((((..((((..((((................
.......))))..)))).))))))).)))............))).))).......)))))))).)).))))).))))).))))).)))).))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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