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ABOUT THIS RECORD

ID: MNEST009833
species: Calanus finmarchicus
miRNA family: miR-1777a
source: miRNEST

Taxonomy by NCBI:
Calanus finmarchicus Calanus Calanidae Calanoida Gymnoplea Neocopepoda Copepoda Maxillopoda Crustacea Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGGGGCTGGGTGGGGAGGGT

miRNA*
CATTTCCTATTCACTCCTTTG

mismatches: 1
bulges: 2

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pre-miRNA
CAGGCTGTTATCTTCTGGAGTGAGACCACAGCTAGTGGTGCTGGGGGCTGGGTGGGGAGGGTTCCGGTGTGCCAGGGATGTGGACAAAACCAAGTATGAT
GTCACTGTGGTGTCACCAAGGAACCATTTCCTATTCACTCCTTTGCTTCCTTCCACCACTGTGGGCACTTTGGAGTTCAGATG


dot-bracket secondary structure
....(((.....((((((((((...((((((...((((.((.(((((.((((((((((((((((((((((((((.((.....((((.............)
))).)).))))).))))..)))))).))))))))))))))))..))......))))..)))))).))))))))))..)))...



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt sp|Q55CD9|NDH_DICDI: 0.00000002

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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