ABOUT THIS RECORDspecies: Oscarella carmela
miRNA family: mir-598
source: miRNEST
Taxonomy by NCBI:
Oscarella carmela Oscarella Plakinidae Homosclerophorida Homoscleromorpha Demospongiae Porifera Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACGTCGTCGTCGTCGTCGTC miRNA* CGGCGGAACGACGTCAGTAAA mismatches: 3 bulges: 2 |
pre-miRNA
AAGCAAAGGCGACGGCGGAACGACGTCAGTAAAAAACGGTGGGCGCAAAATGACACGATATTCTCACAGTGGGCGCGATCGTGATCGGCATGCTTGGGCG
CCGTCTTGCGGGGCGTGTCCCGGGTCTGGCCGCACGTGCACCAAGAGAAGAGCCGGTTCTACGTCGTCGTCGTCGTCGTCGTCGTCGTC
dot-bracket secondary structure
.......(((((((((((.((((((...(((.((..((((....................(((((....(((..((...((((...(((..(((((((((
(.((((....))))))).)))))))...))).)))).)).))).)))))..)))).)).)))..))))))..)))))))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGCAAAGGCGACGGCGGAACGACGTCAGTAAAAAACGGTGGGCGCAAAATGACACGATATTCTCACAGTGGGCGCGATCGTGATCGGCATGCTTGGGCG
CCGTCTTGCGGGGCGTGTCCCGGGTCTGGCCGCACGTGCACCAAGAGAAGAGCCGGTTCTACGTCGTCGTCGTCGTCGTCGTCGTCGTC
dot-bracket secondary structure
.......(((((((((((.((((((...(((.((..((((....................(((((....(((..((...((((...(((..(((((((((
(.((((....))))))).)))))))...))).)))).)).))).)))))..)))).)).)))..))))))..)))))))))))......
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
