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ABOUT THIS RECORD
ID:
MNEST009956
species:
Populus trichocarpa x Populus deltoides
miRNA family:
MIR396
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGAAAGCTGTGGGAGAACAT
miRNA*
GCTTTTCCACAGCTTTCTTGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GTTTAATCTCGCAAGTCCTGGTCAT
GCTTTTCCACAGCTTTCTTGA
ACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCC
TATATATATAAATATATGTATGTATAGCGCCATGGAAGCTC
AAGAAAGCTGTGGGAGAACAT
GGCAATTCAGGATTTTTTTGGGCTCTTTT
dot-bracket secondary structure
.......((((.(((((((((((((
(.(((((((((((((((((((
.(((((..((...((........(((((((.(((....))).)))))))))..(
((((((((((......))))))))))).))...))))).))
))))))))))))))))).)))
)))....))))))))...)))).......
SIMILARITIES
miRBase
ptc-MIR396e
:
2e-40
PMRD
ptc-miR396e
:
2e-40
microPC
miR396
:
2e-34
UniProt
no hits
RFAM
MIR396: 4e-39
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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