miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST009962
species: Populus trichocarpa x Populus deltoides
miRNA family: MIRf1192
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACGGAGGCATTGACGGAGG

miRNA*
TCCGTTAACTCCCCGTCGTC

mismatches: 2
bulges: 1

View larger
pre-miRNA
CATGTAATAATCCGAAGACGGTGACGGAGGCATTGACGGAGGTGGCGCCCTTAAATCTTTAAAATACTCCCTTATATCCACCCCAGCTGCCGTTGCCCTC
TCCGTTAACTCCCCGTCGTC
TCTCGACGGAATAAACGG


dot-bracket secondary structure
.......((.((((..((.((((((((.((..((((((((((.((((..............................................)))).))
))))))))..)))))))).)
).))..)))).)).....



SIMILARITIES
miRBase no hits

PMRD ptc-miRf11809-akr: 1e-62

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: ptc-miRf11809-akr from PMRD (MNEST053631)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;