miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST009963
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR1448
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTTCCAACGCCTCCCATAC

miRNA*
ATGGGAGGATTGGACAGTG

mismatches: 2
bulges: 1

View larger
pre-miRNA
TTACGGGTATGGGAGGATTGGACAGTGCTGCTTGGTTTTAATTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTGATCTC

dot-bracket secondary structure
((((.(((((((((((.(((((.((.((.((((((((......)))).))))..)).)).)))))..))))))))))).))))....


SIMILARITIES
miRBase ptc-MIR1448: 2e-38

PMRD ptc-miR1448: 2e-38

microPC miR1448: 9e-35
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;