miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST009963
species:
Populus trichocarpa x Populus deltoides
miRNA family:
MIR1448
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTTCCAACGCCTCCCATAC
miRNA*
ATGGGAGGATTGGACAGTG
mismatches:
2
bulges:
1
View larger
pre-miRNA
TTACGGGT
ATGGGAGGATTGGACAGTG
CTGCTTGGTTTTAATTAACCAAAGTCTGTT
CTTTCCAACGCCTCCCATAC
CGGTGATCTC
dot-bracket secondary structure
((((.(((
((((((((.(((((.((.(
(.((((((((......)))).))))..)).
)).)))))..))))))))))
).))))....
SIMILARITIES
miRBase
ptc-MIR1448
:
2e-38
PMRD
ptc-miR1448
:
2e-38
microPC
miR1448
:
9e-35
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record