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ABOUT THIS RECORD
ID:
MNEST009964
species:
Populus trichocarpa x Populus deltoides
miRNA family:
MIRf18
source:
miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAAGTGAATTCCGGGAAACAA
miRNA*
GTTTCCCGGAAATCACTTTCC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AACACAGGAAAGTTTGGAAAGTG
GTTTCCCGGAAATCACTTTCC
GGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCA
AAAAGTGTTTCCGTTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGA
AAAGTGAA
TTCCGGGAAACAA
ACATGGCCTTCATGAAACCT
dot-bracket secondary structure
....((((....)))).......
(((((((((((.(((((((.(
((.((((..((....((((..((((..(((((((..((((............))))
.)))))))))))((((((.(((((....)))))))))))..((((((((................))))))))))))...)).)))).))).
))))))).
)))))))))))..
.(((((...)))))......
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf10296-akr
:
2e-41
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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