ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf18
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAGTGAATTCCGGGAAACAA miRNA* GTTTCCCGGAAATCACTTTCC mismatches: 3 bulges: 0 |
pre-miRNA
AACACAGGAAAGTTTGGAAAGTGGTTTCCCGGAAATCACTTTCCGGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCA
AAAAGTGTTTCCGTTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGAAAAGTGAA
TTCCGGGAAACAAACATGGCCTTCATGAAACCT
dot-bracket secondary structure
....((((....)))).......(((((((((((.(((((((.(((.((((..((....((((..((((..(((((((..((((............))))
.)))))))))))((((((.(((((....)))))))))))..((((((((................))))))))))))...)).)))).))).))))))).
)))))))))))...(((((...)))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AACACAGGAAAGTTTGGAAAGTGGTTTCCCGGAAATCACTTTCCGGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCA
AAAAGTGTTTCCGTTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGAAAAGTGAA
TTCCGGGAAACAAACATGGCCTTCATGAAACCT
dot-bracket secondary structure
....((((....)))).......(((((((((((.(((((((.(((.((((..((....((((..((((..(((((((..((((............))))
.)))))))))))((((((.(((((....)))))))))))..((((((((................))))))))))))...)).)))).))).))))))).
)))))))))))...(((((...)))))......
SIMILARITIES| miRBase no hits PMRD ptc-miRf10296-akr: 2e-41 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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