ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf11
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCCCGGAAATCACTTTCCG miRNA* AAAAGTGAATTCCGGGAAACA mismatches: 2 bulges: 0 |
pre-miRNA
TTGGAAAGTGGTTTCCCGGAAATCACTTTCCGGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCAAAAAGTGTTTCCG
TTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGAAAAGTGAATTCCGGGAAACAA
ACATGGC
dot-bracket secondary structure
..(((((((((((((...)))))))))))))((((((((....(((.(((..((((..(((((((..((((............)))).))))))))))).
))).))).....)))))))).....(((((((((((................))))))).))))...((.((((((((.((......)).))))))))..
)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGGAAAGTGGTTTCCCGGAAATCACTTTCCGGAAAACAAACACAGCCAAAAGGAAAAACACTTTCCTGAAAACCAAACCAAATTCAAAAAGTGTTTCCG
TTGACTGGAAAGTGTTTTCCGTTGACCAACTTTCCTAATAGCAAATAAACACAGGAAAGTTTGGAAAGTGGTTTCCCGAAAAGTGAATTCCGGGAAACAA
ACATGGC
dot-bracket secondary structure
..(((((((((((((...)))))))))))))((((((((....(((.(((..((((..(((((((..((((............)))).))))))))))).
))).))).....)))))))).....(((((((((((................))))))).))))...((.((((((((.((......)).))))))))..
)).....
SIMILARITIES| miRBase no hits PMRD ptc-miRf10296-akr: 2e-41 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
