ABOUT THIS RECORDspecies: Populus trichocarpa x Populus deltoides
miRNA family: MIRf312
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTAAACCCGGACCGGTCC miRNA* GCCGGGCCGGGTTTAATAACT mismatches: 1 bulges: 0 |
pre-miRNA
TGTTGCCACAGCCGGTCTTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGTCGACCCGCCGGGCCGGGCCGGGTTTAATAACTA
TGCCGTTGACTTGGC
dot-bracket secondary structure
....((((((((.(((...(((((((((((((.(((((((.((....(((((((((((...)).))))))))))).))))))).)))))))))))))...
.)))))))...))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGTTGCCACAGCCGGTCTTTTATTAAACCCGGACCGGTCCAGCCACCGGGTCGACCGGGTCCCGGGTCGACCCGCCGGGCCGGGCCGGGTTTAATAACTA
TGCCGTTGACTTGGC
dot-bracket secondary structure
....((((((((.(((...(((((((((((((.(((((((.((....(((((((((((...)).))))))))))).))))))).)))))))))))))...
.)))))))...))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11676-akr: 4e-47 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: ptc-miRf11898-akr from PMRD (MNEST053720) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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