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ABOUT THIS RECORD

ID: MNEST009971
species: Populus trichocarpa x Populus deltoides
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCACTGCCTCTTCCCTGGCT

miRNA*
 ACGGGGAACAGGCAGAGCATG

mismatches: 3
bulges: 0
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pre-miRNA
 ACGTAAACAGGGNATCGTGGGGAGAGGGAGCAGAAAGAGACAGATGAAGACGGGGAACAGGCAGAGCATGGATGGAGCTACTAACAGAAGTACATGTTTT
GGCTCTACCCATGCACTGCCTCTTCCCTGGCTTGTGGCTCTTCTTTTTCTCCTCCCTTCTTTTGTTTCCATTTACTTT

dot-bracket secondary structure
..(((((..(((...((.((((..((((((.(((((((((.(((..(((.(((((((.((((((.((((((.((((((((..((((........)))).)
))))))).)))))).)))))).))))))).))).....)))))))))))).)))))))))).))..))).)))))...


SIMILARITIES
miRBase ptc-MIR408: 3e-52

PMRD ptc-miR408: 3e-52

microPC miR408: 9e-43		UniProt no hits

RFAM MIR408: 1e-54		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
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