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ABOUT THIS RECORD
ID:
MNEST024642
species:
Branchiostoma floridae
miRNA family:
let-7
source:
miRBase, original name:
bfl-let-7a-2
(
MI0010007
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTGTATAGTT
miRNA*
CTGTGCAACCTGCTAGCTCTCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
AGACACGGGTGCACCTGAGG
TGAGGTAGTAGGTTGTATAGTT
GAGAAGTACATCATTGGAGATAA
CTGTGCAACCTGCTAGCTCTCC
TTGGGGCATGCC
dot-bracket secondary structure
......(.((((.((..(((
.(((.(((((((((((((((((
(.......((....))....)))
))))))))))))))).))).))
)..)))))).).
SIMILARITIES
miRBase
bfl-let-7a-1
:
4e-19
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
let-7: 5e-37
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
cloned
references
[
1
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"