ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-7
source: miRBase, original name: bfl-mir-7 (MI0010009)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTGT miRNA* AGTAAATCACAGTCTTCCTTA mismatches: 3 bulges: 2 |
pre-miRNA
GTGTTCTGTATGGAAGACTAGTGATTTTGTTGTTGTGTGTCTTGCAAACAACAGTAAATCACAGTCTTCCTTACGGTGCATC
dot-bracket secondary structure
((((.(((((.((((((((.(((((((...((((((.((.....)).))))))..))))))))))))))).))))).)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GTGTTCTGTATGGAAGACTAGTGATTTTGTTGTTGTGTGTCTTGCAAACAACAGTAAATCACAGTCTTCCTTACGGTGCATC
dot-bracket secondary structure
((((.(((((.((((((((.(((((((...((((((.((.....)).))))))..))))))))))))))).))))).)))).
SIMILARITIES| miRBase tgu-mir-7-4: 0.0000000003 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 4e-40 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
