ABOUT THIS RECORDspecies: Branchiostoma floridae
source: miRBase, original name: bfl-mir-10c (MI0010013)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGATCCGGACTTGT miRNA* AAATCCGATTTACAGGATAGG mismatches: 2 bulges: 1 |
pre-miRNA
TCCCCAGGATTACCCTGTAGATCCGGACTTGTGGTCACTTCATCACACAAATCCGATTTACAGGATAGGCCTTGGCAA
dot-bracket secondary structure
...(((((.(((.((((((((((.(((.(((((............))))).))))))))))))).)))..)))))...
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TCCCCAGGATTACCCTGTAGATCCGGACTTGTGGTCACTTCATCACACAAATCCGATTTACAGGATAGGCCTTGGCAA
dot-bracket secondary structure
...(((((.(((.((((((((((.(((.(((((............))))).))))))))))))).)))..)))))...
SIMILARITIES| miRBase dre-mir-10c: 0.0009 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
