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ABOUT THIS RECORD

ID: MNEST024655
species: Branchiostoma floridae
miRNA family: mir-29
source: miRBase, original name: bfl-mir-29b (MI0010016)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCACCATTTGAAATCAGTGCTT

miRNA*
GACTGGTTCCAAGTGGTGGGTAG

mismatches: 2
bulges: 2

View larger
pre-miRNA
CACTGCAGGTTTTCTATCCTGGAAGACTGGTTCCAAGTGGTGGGTAGATGGCACTGAGATCTAGCACCATTTGAAATCAGTGCTTTCAGGACTAG

dot-bracket secondary structure
.............(((((((((((((((((((.((((((((.(.(((((.........))))).))))))))).))))))).))))))))).)))


SIMILARITIES
miRBase cte-mir-29b: 0.000001

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-29: 0.00002

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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