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ABOUT THIS RECORD

ID: MNEST024656
species: Branchiostoma floridae
miRNA family: mir-31
source: miRBase, original name: bfl-mir-31 (MI0010017)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGCAAGATGTTGGCATAGCTGT

miRNA*
CGGCTGTGCTGACAAACTGCCATT

mismatches: 5
bulges: 1

View larger
pre-miRNA
TGACGGAGGGCGAGGAAATGGCAAGATGTTGGCATAGCTGTTTGGAGTTCTGGGTCGGCTGTGCTGACAAACTGCCATTTCCCGTTCACTCCTATTACAA
C


dot-bracket secondary structure
....((((.(((.((((((((((...(((..(((((((((((..(....)..)).)))))))))..)))...)))))))))))))...))))........
.



SIMILARITIES
miRBase dre-mir-31: 0.0000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-31: 2e-39

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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