miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST024665
species: Branchiostoma floridae
miRNA family: mir-71
source: miRBase, original name: bfl-mir-71 (MI0010020)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAAGACATGGGTAGTGAGAT

miRNA*
CCCATTTCCCTGTCTTTCAACA

mismatches: 2
bulges: 2

View larger
pre-miRNA
GCTATAGTTGCCACCACATTGTGAAAGACATGGGTAGTGAGATTTGTATCATGAATTTATCCCATTTCCCTGTCTTTCAACAAGGTGTTGGCAGTTTAGC
A


dot-bracket secondary structure
((((...((((((.(((.((((((((((((.(((.((((.(((..((.......))..))).)))).))))))))))).)))).))).))))))..))))
.



SIMILARITIES
miRBase spu-mir-71: 0.00000008

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-71: 4e-25

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;