miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST024665
species:
Branchiostoma floridae
miRNA family:
mir-71
source:
miRBase, original name:
bfl-mir-71
(
MI0010020
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAAAGACATGGGTAGTGAGAT
miRNA*
CCCATTTCCCTGTCTTTCAACA
mismatches:
2
bulges:
2
View larger
pre-miRNA
GCTATAGTTGCCACCACATTG
TGAAAGACATGGGTAGTGAGAT
TTGTATCATGAATTTAT
CCCATTTCCCTGTCTTTCAACA
AGGTGTTGGCAGTTTAGC
A
dot-bracket secondary structure
((((...((((((.(((.(((
(((((((((.(((.((((.(((
..((.......))..))
).)))).))))))))))).)))
).))).))))))..))))
.
SIMILARITIES
miRBase
spu-mir-71
:
0.00000008
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
mir-71: 4e-25
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"
[
2
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"