miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST024668
species: Branchiostoma floridae
miRNA family: mir-25
source: miRBase, original name: bfl-mir-92a-3 (MI0010523)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATTGCACTTGTCCCGGCCTTT

miRNA*
AGGTCGTGATAGGTGGCAATGTT

mismatches: 1
bulges: 1

View larger
pre-miRNA
AGAACATTGCCCTGACAAGAAGGTCGTGATAGGTGGCAATGTTGTACCCACACAAATATTGCACTTGTCCCGGCCTTTTTGC

dot-bracket secondary structure
...............(((((((((((.((((((((.(((((((((......)).))))))))))))))).))))))))))).


SIMILARITIES
miRBase bfl-mir-92a-2: 2e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-92: 4e-34

Identical with: bfl-mir-92a-2 from miRBase (MNEST024667)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, cloned

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"




Liczniki na strone;