miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST024674
species: Branchiostoma floridae
miRNA family: mir-125
source: miRBase, original name: bfl-mir-125a (MI0010027)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCCTGAGACCCTAACTTGTGA

miRNA*
ACAGGTTAGGATCTTGGGAGC

mismatches: 1
bulges: 1

View larger
pre-miRNA
ATCTGTTGGTGTGTTCCCCATTCCCTGAGACCCTAACTTGTGATGTCCATGGCTCACAGGTTAGGATCTTGGGAGCTGGGTGACATACGCCCTCCACTTC
A


dot-bracket secondary structure
.......((((((((((((((((((.((((.((((((((((((.((.....)))))))))))))).))))))))).)))).)).))))))).........
.



SIMILARITIES
miRBase bfl-mir-125b: 3e-41

PMRD no hits

microPC no hits
UniProt no hits

RFAM lin-4: 7e-30

Identical with: bfl-mir-125b from miRBase (MNEST024675)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




Liczniki na strone;