miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST024674
species:
Branchiostoma floridae
miRNA family:
mir-125
source:
miRBase, original name:
bfl-mir-125a
(
MI0010027
)
Taxonomy by NCBI:
Branchiostoma floridae
Branchiostoma
Branchiostomidae
Cephalochordata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCCCTGAGACCCTAACTTGTGA
miRNA*
ACAGGTTAGGATCTTGGGAGC
mismatches:
1
bulges:
1
View larger
pre-miRNA
ATCTGTTGGTGTGTTCCCCAT
TCCCTGAGACCCTAACTTGTGA
TGTCCATGGCTC
ACAGGTTAGGATCTTGGGAGC
TGGGTGACATACGCCCTCCACTTC
A
dot-bracket secondary structure
.......((((((((((((((
((((.((((.((((((((((((
.((.....))))
)))))))))).))))))))).
)))).)).))))))).........
.
SIMILARITIES
miRBase
bfl-mir-125b
:
3e-41
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
lin-4: 7e-30
Identical with:
bfl-mir-125b
from miRBase (
MNEST024675
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M,
Evol Dev. 13:15-27(2011).
,
"microRNA complements in deuterostomes: origin and evolution of microRNAs"
[
2
] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ,
Evol Dev. 11:50-68(2009).
,
"The deep evolution of metazoan microRNAs"