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ABOUT THIS RECORD

ID: MNEST024682
species: Branchiostoma floridae
miRNA family: mir-135
source: miRBase, original name: bfl-mir-135b-2 (MI0015994)

Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AATGGCTTTCATCCTTTGTGA

miRNA*
ACACTGATGGGGGTTATTGG

mismatches: 4
bulges: 1

View larger
pre-miRNA
CCGTGTCCAATGGCTTTCATCCTTTGTGAATGTCTGAGCACAGTTCACACTGATGGGGGTTATTGGACAAGA

dot-bracket secondary structure
...((((((((((((..((((...(((((((((......))).))))))..))))..))))))))))))...


SIMILARITIES
miRBase bfl-mir-135b-1: 2e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: bfl-mir-135b-1 from miRBase (MNEST024681)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"




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