ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-183
source: miRBase, original name: bfl-mir-183 (MI0010031)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGCACTGGTAGAATTCACT miRNA* TGATTCTTCAGTCAGCCATACA mismatches: 0 bulges: 4 |
pre-miRNA
CCACGTGCCCGTTCACGGTCTATGGCACTGGTAGAATTCACTGATCGTAGACACCAGTGATTCTTCAGTCAGCCATACACCGTGGCGGGAAACTGATCAT
C
dot-bracket secondary structure
.((....(((((.((((((.(((((((((((.(((((.(((((...........)))))))))))))))..)))))).)))))))))))....)).....
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
CCACGTGCCCGTTCACGGTCTATGGCACTGGTAGAATTCACTGATCGTAGACACCAGTGATTCTTCAGTCAGCCATACACCGTGGCGGGAAACTGATCAT
C
dot-bracket secondary structure
.((....(((((.((((((.(((((((((((.(((((.(((((...........)))))))))))))))..)))))).)))))))))))....)).....
.
SIMILARITIES| miRBase pma-mir-183: 0.00000008 PMRD no hits microPC no hits | UniProt no hits RFAM mir-183: 4e-50 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
