ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-8
source: miRBase, original name: bfl-mir-200a (MI0010035)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAATACTGCCTGGTAATGATGC miRNA* ATCTTACTTGGCAGCATTCGA mismatches: 4 bulges: 1 |
pre-miRNA
GACATGTTAGCTTGATTCCTGACATCTTACTTGGCAGCATTCGATGTGTTTCCATATTCAAATACTGCCTGGTAATGATGCCAGTCAAGTTTCCTCACAG
T
dot-bracket secondary structure
.....(..(((((((...(((.(((((((((.(((((.(((.((((((....))))))..))).))))).))))).)))).))))))))))..)......
.
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
GACATGTTAGCTTGATTCCTGACATCTTACTTGGCAGCATTCGATGTGTTTCCATATTCAAATACTGCCTGGTAATGATGCCAGTCAAGTTTCCTCACAG
T
dot-bracket secondary structure
.....(..(((((((...(((.(((((((((.(((((.(((.((((((....))))))..))).))))).))))).)))).))))))))))..)......
.
SIMILARITIES| miRBase pma-mir-200b: 0.00008 PMRD no hits microPC no hits | UniProt no hits RFAM mir-8: 2e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
