ABOUT THIS RECORDspecies: Branchiostoma floridae
miRNA family: mir-216
source: miRBase, original name: bfl-mir-216 (MI0010039)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTCAGCTGGCAACTGTGAG miRNA* CACGGTGCAAGCTGGGATCGCT mismatches: 3 bulges: 1 |
pre-miRNA
TGGTTGTGTAATCTCAGCTGGCAACTGTGAGTCTAACTTCACATCCTCACGGTGCAAGCTGGGATCGCTCAAACT
dot-bracket secondary structure
...(((.(..(((((((((.(((.(((((((..............)))))))))).)))))))))..).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
TGGTTGTGTAATCTCAGCTGGCAACTGTGAGTCTAACTTCACATCCTCACGGTGCAAGCTGGGATCGCTCAAACT
dot-bracket secondary structure
...(((.(..(((((((((.(((.(((((((..............)))))))))).)))))))))..).)))...
SIMILARITIES| miRBase dre-mir-216a-1: 0.0000009 PMRD no hits microPC no hits | UniProt no hits RFAM mir-216: 6e-36 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ, Evol Dev. 11:50-68(2009)., "The deep evolution of metazoan microRNAs"
