ABOUT THIS RECORDspecies: Branchiostoma floridae
source: miRBase, original name: bfl-mir-705 (MI0010528)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTGGGAGGTGGGGTGGTTC miRNA* GCCTATCCTCAGTCTCCCCTTACTC mismatches: 4 bulges: 5 |
pre-miRNA
GCATGAGGTGGGAGGTGGGGTGGTTCCCGAAGTCTGAGCTGACATAGCCTATCCTCAGTCTCCCCTTACTCAGAACAAGGTC
dot-bracket secondary structure
...((((..(((((((((((.((((.....(((....))).....))))...))))).))))))....))))..........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
GCATGAGGTGGGAGGTGGGGTGGTTCCCGAAGTCTGAGCTGACATAGCCTATCCTCAGTCTCCCCTTACTCAGAACAAGGTC
dot-bracket secondary structure
...((((..(((((((((((.((((.....(((....))).....))))...))))).))))))....))))..........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P56558|OGT1_RAT: 0.0000003 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
