ABOUT THIS RECORDspecies: Branchiostoma floridae
source: miRBase, original name: bfl-mir-2059 (MI0010494)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAAGGCAAATTGCTGCAATACT miRNA* TATTGCACTTTTTTGCTTTGAA mismatches: 3 bulges: 0 |
pre-miRNA
CATTTGTGTTGGACCCCTTTCAAGGCAAATTGCTGCAATACTTTGTATCCTGCAAGTATTGCACTTTTTTGCTTTGAAAGGT
dot-bracket secondary structure
...............((((((((((((((..(.((((((((((.((.....)))))))))))).)..)))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
CATTTGTGTTGGACCCCTTTCAAGGCAAATTGCTGCAATACTTTGTATCCTGCAAGTATTGCACTTTTTTGCTTTGAAAGGT
dot-bracket secondary structure
...............((((((((((((((..(.((((((((((.((.....)))))))))))).)..)))))))))))))).
SIMILARITIES| miRBase bfl-mir-2059: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M, Evol Dev. 13:15-27(2011)., "microRNA complements in deuterostomes: origin and evolution of microRNAs"
[2] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
