ABOUT THIS RECORDspecies: Branchiostoma floridae
source: miRBase, original name: bfl-mir-2063 (MI0010498)
Taxonomy by NCBI:
Branchiostoma floridae Branchiostoma Branchiostomidae Cephalochordata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTAATTTGCTTTTGA miRNA* AAAAAGCAAAAAGTTGCAATATC mismatches: 1 bulges: 3 |
pre-miRNA
AGGCTCACTTTCAAAAAGCAAAAAGTTGCAATATCGGTATACGACGTTACGTAGATATTGCACTAATTTGCTTTTGAAAGTG
dot-bracket secondary structure
.....(((((((((((.(((((.(((.((((((((....((((......)))))))))))))))..))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
AGGCTCACTTTCAAAAAGCAAAAAGTTGCAATATCGGTATACGACGTTACGTAGATATTGCACTAATTTGCTTTTGAAAGTG
dot-bracket secondary structure
.....(((((((((((.(((((.(((.((((((((....((((......)))))))))))))))..))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] Dai Z, Chen Z, Ye H, Zhou L, Cao L, Wang Y, Peng S, Chen L, Evol Dev. 11:41-49(2009)., "Characterization of microRNAs in cephalochordates reveals a correlation between microRNA repertoire homology and morphological similarity in chordate evolution"
