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ABOUT THIS RECORD
ID:
MNEST025316
species:
Ciona savignyi
miRNA family:
let-7
source:
miRBase, original name:
csa-let-7c-2
(
MI0007184
)
Taxonomy by NCBI:
Ciona savignyi
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTATGCAGTT
miRNA*
CTGTGTAACTTGCTGGCTCTTT
mismatches:
2
bulges:
0
View larger
pre-miRNA
CTCTTGCTGATAACA
TGAGGTAGTAGGTTATGCAGTT
TGGCGACAATATTTCGTTGCAAAGGAGATAA
CTGTGTAACTTGCTGGCTCTTT
TATCGACAAC
TC
dot-bracket secondary structure
...(((.((((((..
.(((.(((((((((((((((((
..(((((........))))).........))
))))))))))))))).)))..)
))))).))).
..
SIMILARITIES
miRBase
cin-let-7a-2
:
0.000000000001
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
let-7: 8e-39
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"