ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-7
source: miRBase, original name: csa-mir-7 (MI0007186)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTGT miRNA* AACAACAATCTTTAGTCTACTGCA mismatches: 5 bulges: 1 |
pre-miRNA
CCGTCCTCTACCACGTGGAAGACTAGTGATTTTGTTGTTTCATCAACAACAATCTTTAGTCTACTGCACGGTTGATGGATGCTATCATCATTTCTTATTT
TTG
dot-bracket secondary structure
.(((((((.(((..(..(.(((((((.((((((((((......)))))).)))).))))))).)..)..))).)).)))))...................
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
CCGTCCTCTACCACGTGGAAGACTAGTGATTTTGTTGTTTCATCAACAACAATCTTTAGTCTACTGCACGGTTGATGGATGCTATCATCATTTCTTATTT
TTG
dot-bracket secondary structure
.(((((((.(((..(..(.(((((((.((((((((((......)))))).)))).))))))).)..)..))).)).)))))...................
...
SIMILARITIES| miRBase cin-mir-7: 0.00000000002 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 8e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
