ABOUT THIS RECORDspecies: Ciona savignyi
miRNA family: mir-92
source: miRBase, original name: csa-mir-92a (MI0007189)
Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATTGCACTTGTCCCGGTCTA miRNA* GACCAGACAAAGTGTATTGCG mismatches: 2 bulges: 2 |
pre-miRNA
ATCATAACCACAACTATGTATCAATATGCCTAGACCAGACAAAGTGTATTGCGTTGTTGCAATCGTATTGCACTTGTCCCGGTCTAAGCATTTGGTAAGA
AAG
dot-bracket secondary structure
..................((((((.((((.((((((.(((((.(((((.(((((((...))).)))).))))))))))..)))))).))))))))))...
...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
ATCATAACCACAACTATGTATCAATATGCCTAGACCAGACAAAGTGTATTGCGTTGTTGCAATCGTATTGCACTTGTCCCGGTCTAAGCATTTGGTAAGA
AAG
dot-bracket secondary structure
..................((((((.((((.((((((.(((((.(((((.(((((((...))).)))).))))))))))..)))))).))))))))))...
...
SIMILARITIES| miRBase cin-mir-92a: 0.0003 PMRD no hits microPC no hits | UniProt no hits RFAM ciona-mir-92: 2e-39 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"
