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ABOUT THIS RECORD
ID:
MNEST025326
species:
Ciona savignyi
miRNA family:
mir-126
source:
miRBase, original name:
csa-mir-126
(
MI0007194
)
Taxonomy by NCBI:
Ciona savignyi
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGTACCGTGAGTAATAAAGC
miRNA*
CTTGTTACCTACGGTACCAGG
mismatches:
3
bulges:
0
View larger
pre-miRNA
GTGTCATAATTATGGTTTTCGATGCTGC
CTTGTTACCTACGGTACCAGG
TAGAAAGTAAGTCATC
TCGTACCGTGAGTAATAAAGC
ATTCTCGGAGGCTC
A
dot-bracket secondary structure
.............(((((((((.(.(((
.(((((((.((((((((.(((
(.((.......)))))
).)))))))).))))))).))
).).))))))))).
.
SIMILARITIES
miRBase
cin-mir-126
:
2e-36
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"