miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST025881
species: Gallus gallus
miRNA family: mir-1
source: miRBase, original name: gga-mir-1b (MI0001254)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAATGTTAAGAAGTATGTA

miRNA*
CATACTTCTTCATATGCCCATA

mismatches: 3
bulges: 1

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pre-miRNA
ACATACTTCTTCATATGCCCATATGGAGTCGGCCGGCGTTATGGAATGTTAAGAAGTATGTATC

dot-bracket secondary structure
(((((((((((.((((..(((((....(((....)))..))))).)))).)))))))))))...


SIMILARITIES
miRBase xla-mir-1b: 0.000003

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-1: 2e-29

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"




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