ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-7
source: miRBase, original name: gga-mir-7-3 (MI0001269)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTGTTG miRNA* ACAAATCATAGCCTGCCATA mismatches: 2 bulges: 2 |
pre-miRNA
CTGTGGTCTGGCTCTGTGTGGAAGACTAGTGATTTTGTTGTTATGATTTATAAAGGTGACAACAAATCATAGCCTGCCATACAGCACAGATCTTC
dot-bracket secondary structure
....((((((...((((((((.((.(((.((((((.((((((((...........))))))))))))))))).)).))))))))..))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
CTGTGGTCTGGCTCTGTGTGGAAGACTAGTGATTTTGTTGTTATGATTTATAAAGGTGACAACAAATCATAGCCTGCCATACAGCACAGATCTTC
dot-bracket secondary structure
....((((((...((((((((.((.(((.((((((.((((((((...........))))))))))))))))).)).))))))))..))))))...
SIMILARITIES| miRBase tgu-mir-7-4: 9e-29 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 8e-45 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ, Genome Res. 18:995-1004(2008)., "Conservation of small RNA pathways in platypus"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
