ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-7
source: miRBase, original name: gga-mir-7b (MI0001279)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGAAGACTAGTGATTTTTGTT miRNA* CAAATCACAGTCTACCATA mismatches: 1 bulges: 3 |
pre-miRNA
TGGACATTGGTCTAGTTCTGTGTGGAAGACTAGTGATTTTTGTTGTTTTTAGATAACTAAATTGACAACAAATCACAGTCTACCATATGGCACAGACTAT
GCCTCTACAG
dot-bracket secondary structure
.((.(((.(((((.((.((((((((.(((((.((((((..((((((((((((....)))))..)))))))))))))))))).)))))))).)))))))))
))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
TGGACATTGGTCTAGTTCTGTGTGGAAGACTAGTGATTTTTGTTGTTTTTAGATAACTAAATTGACAACAAATCACAGTCTACCATATGGCACAGACTAT
GCCTCTACAG
dot-bracket secondary structure
.((.(((.(((((.((.((((((((.(((((.((((((..((((((((((((....)))))..)))))))))))))))))).)))))))).)))))))))
))).......
SIMILARITIES| miRBase gga-mir-7-1: 5e-40 PMRD no hits microPC no hits | UniProt no hits RFAM mir-7: 1e-44 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
