ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-10
source: miRBase, original name: gga-mir-10a (MI0007559)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACCCTGTAGATCCGAATTTGT miRNA* AAATTCGTATCTAGGGGAATA mismatches: 2 bulges: 1 |
pre-miRNA
CTATATGTACCCTGTAGATCCGAATTTGTGTAAAGGAAGTTGGGTCACAAATTCGTATCTAGGGGAATATGTAG
dot-bracket secondary structure
((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
CTATATGTACCCTGTAGATCCGAATTTGTGTAAAGGAAGTTGGGTCACAAATTCGTATCTAGGGGAATATGTAG
dot-bracket secondary structure
((((((((.((((.(((((.((((((((((...............)))))))))).))))))))).))))))))
SIMILARITIES| miRBase eca-mir-10a: 1e-18 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 2e-35 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: Solexa, cloned
deep sequencing data evidence
references
[1] Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML, Genome Res. 18:957-964(2008)., "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach"
[2] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
