ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-19
source: miRBase, original name: gga-mir-19b (MI0001180)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGCAAATCCATGCAAAACTGA miRNA* AGTTTTGCAGGTTTGCATCCAGC mismatches: 0 bulges: 4 |
pre-miRNA
CACTGTTCTCTGGTTAGTTTTGCAGGTTTGCATCCAGCTGTATGATACTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGCAGTG
dot-bracket secondary structure
(((((((...((((((((((((((((((((((..((((.(((...)))...)))))))))).)).)))))))))))))).)))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
CACTGTTCTCTGGTTAGTTTTGCAGGTTTGCATCCAGCTGTATGATACTCTGCTGTGCAAATCCATGCAAAACTGACTGTGGCAGTG
dot-bracket secondary structure
(((((((...((((((((((((((((((((((..((((.(((...)))...)))))))))).)).)))))))))))))).)))))))
SIMILARITIES| miRBase mdo-mir-19b: 1e-36 PMRD no hits microPC no hits | UniProt no hits RFAM mir-19: 7e-36 |
Identical with: tgu-mir-19b-1 from miRBase (MNEST026407) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
references
[1] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[2] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[3] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
