miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST025905
species: Gallus gallus
miRNA family: mir-21
source: miRBase, original name: gga-mir-21 (MI0004994)

Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCTTATCAGACTGATGTTGA

miRNA*
AACAACAGTCGGTAGGCTGTC

mismatches: 2
bulges: 1

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pre-miRNA
TGTACCATCCTGTCGGATAGCTTATCAGACTGATGTTGACTGTTGGATCTCATGGCAACAACAGTCGGTAGGCTGTCTGACATTTTGGTATCTCTCA

dot-bracket secondary structure
.((((((...((((((((((((((((.(((((.(((((.((((........))))))))).)))))))))))))))))))))...))))))......


SIMILARITIES
miRBase tgu-mir-21: 3e-35

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-21: 5e-34

Identical with: tgu-mir-21 from miRBase (MNEST026411)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"




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