ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-30
source: miRBase, original name: gga-mir-30c-2 (MI0001205)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTAAACATCCTACACTCTCAGCT miRNA* CTGGGAGAAGGCTGTTTACTCT mismatches: 3 bulges: 2 |
pre-miRNA
AGGTACTGTAAACATCCTACACTCTCAGCTGTGGAAACTAAGAAAGCTGGGAGAAGGCTGTTTACTCTCCCT
dot-bracket secondary structure
(((....(((((((.(((...(((((((((..(....)......))))))))).))).)))))))....)))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[4] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
AGGTACTGTAAACATCCTACACTCTCAGCTGTGGAAACTAAGAAAGCTGGGAGAAGGCTGTTTACTCTCCCT
dot-bracket secondary structure
(((....(((((((.(((...(((((((((..(....)......))))))))).))).)))))))....)))
SIMILARITIES| miRBase tgu-mir-30c: 4e-30 PMRD no hits microPC no hits | UniProt no hits RFAM mir-30: 5e-27 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern
references
[1] Xu H, Wang X, Du Z, Li N, FEBS Lett. 580:3610-3616(2006)., "Identification of microRNAs from different tissues of chicken embryo and adult chicken"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
[4] Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V, J Virol. 82:4007-4015(2008)., "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
