ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-34
source: miRBase, original name: gga-mir-34b (MI0001260)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGCAGTGTAGTTAGCTGATTG miRNA* ATCACTAAATTCACTGCCATCA mismatches: 5 bulges: 1 |
pre-miRNA
GTGCTTGGTTTGCAGGCAGTGTAGTTAGCTGATTGTACCCAGCGCCCCACAATCACTAAATTCACTGCCATCAAAACAAGGCAC
dot-bracket secondary structure
((((((.((((...(((((((...((((.(((((((............)))))))))))...)))))))....)))).))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
GTGCTTGGTTTGCAGGCAGTGTAGTTAGCTGATTGTACCCAGCGCCCCACAATCACTAAATTCACTGCCATCAAAACAAGGCAC
dot-bracket secondary structure
((((((.((((...(((((((...((((.(((((((............)))))))))))...)))))))....)))).))))))
SIMILARITIES| miRBase tgu-mir-34c-1: 7e-17 PMRD no hits microPC no hits | UniProt no hits RFAM mir-34: 3e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
