ABOUT THIS RECORDspecies: Gallus gallus
miRNA family: mir-99
source: miRBase, original name: gga-mir-99a (MI0001173)
Taxonomy by NCBI:
Gallus gallus Gallus Phasianinae Phasianidae Galliformes Neognathae Aves Coelurosauria Theropoda Saurischia Dinosauria Archosauria Sauria Sauropsida Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AACCCGTAGATCCGATCTTGTG miRNA* CAAGCTCGCTTCTATGGGTCTG mismatches: 4 bulges: 0 |
pre-miRNA
CCAATTGGCATAAACCCGTAGATCCGATCTTGTGTTGAAATGCACTGCACAAGCTCGCTTCTATGGGTCTGTGTCAGTATG
dot-bracket secondary structure
...(((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).)))))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
CCAATTGGCATAAACCCGTAGATCCGATCTTGTGTTGAAATGCACTGCACAAGCTCGCTTCTATGGGTCTGTGTCAGTATG
dot-bracket secondary structure
...(((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).)))))))))...
SIMILARITIES| miRBase tgu-mir-99-2: 2e-32 PMRD no hits microPC no hits | UniProt no hits RFAM mir-10: 4e-34 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned
deep sequencing data evidence
references
[1] Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH, Gene. 418:34-40(2008)., "Identification of novel chicken microRNAs and analysis of their genomic organization"
[2] McBride D, Carre W, Law A, Clinton M, Unpublished.,
[3] International Chicken Genome Sequencing Consortium, Nature. 432:695-716(2004)., "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution"
